Files::TARGETS: Difference between revisions
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| off | | off | ||
| [[Control key types|logical]] | | [[Control key types|logical]] | ||
| set the set as a reference. In the reference mode, the set can contain only one point. | | set the set as a reference. In the reference mode, the set can contain only one point. This option is mutually exclusive with ''references'' and ''shift2zero''. | ||
|- style="vertical-align: top; background-color: #f6f6f6;" | |- style="vertical-align: top; background-color: #f6f6f6;" | ||
| references | | references | ||
| | | | ||
| [[Control key types|list]] | | [[Control key types|list]] | ||
| names of sets, which are references for this set. This option is mutually exclusive with ''isreference' and 'shift2zero'. | | names of sets, which are references for this set. This option is mutually exclusive with ''isreference'' and ''shift2zero''. | ||
|- style="vertical-align: top;" | |- style="vertical-align: top;" | ||
| shift2zero | | shift2zero | ||
| off | | off | ||
| [[Control key types|logical]] | | [[Control key types|logical]] | ||
| make TRG energies relative to the global minima. This option is mutually exclusive with ''isreference' and 'reference'. | | make TRG energies relative to the global minima. This option is mutually exclusive with ''isreference'' and ''reference''. | ||
|- | |- | ||
| colspan="4" style="vertical-align: top; background-color: #d6d6d6; text-align:center;" | ''Points'' | | colspan="4" style="vertical-align: top; background-color: #d6d6d6; text-align:center;" | ''Points'' | ||
| Line 117: | Line 117: | ||
| save geometries of all points at the end of each [[Files::FFOPT|{FFOPT}]] group | | save geometries of all points at the end of each [[Files::FFOPT|{FFOPT}]] group | ||
|- style="vertical-align: top; background-color: #f6f6f6;" | |- style="vertical-align: top; background-color: #f6f6f6;" | ||
| nofreqs | |||
| off | |||
| [[Control key types|logical]] | |||
| do not calculate TRG vibrational frequencies when a point contains TRG Hessian | |||
|- style="vertical-align: top;" | |||
| wmode | | wmode | ||
| "auto" | | "auto" | ||
| [[Control key types|string]] | | [[Control key types|string]] | ||
| weight mode. Supported modes: auto and ire2 | | weight mode. Supported modes: auto and ire2 | ||
|- style="vertical-align: top;" | |- style="vertical-align: top; background-color: #f6f6f6;" | ||
| point | | point | ||
| | | | ||
| [[Control key types|string]] | | [[Control key types|string]] | ||
| file name of point optionally followed by its weight. Multiple number of 'point specifications can be provided. | | file name of point optionally followed by its weight. Multiple number of ''point'' specifications can be provided. | ||
|- style="vertical-align: top | |- style="vertical-align: top;" | ||
| points | | points | ||
| | | | ||
| [[Control key types|string]] | | [[Control key types|string]] | ||
| file name of stream with points optionally followed by its weight. Multiple number of 'points' specifications can be provided. | | file name of stream with points optionally followed by its weight. Multiple number of ''points'' specifications can be provided. | ||
|} | |} | ||
Revision as of 19:02, 4 March 2019
Navigation: Documentation / Files / Control files / {TARGETS}
The {TARGETS} group is employed by the ffoptimize program for definition of training data. The group can obtain one [setup] section and several [set] sections. The [setup] section is processed first and it alters default values for keys in the [set] sections with the same name.
[setup]
| Key | Default value | Type | Description |
| optgeo | off | logical | optimize geometry at each optimization step |
| keepoptgeo | off | logical | keep optimized geometries for the next optimization step |
| nofreqs | off | logical | do not calculate TRG vibrational frequencies when a point contains TRG Hessian |
| savegeo | off | logical | save geometries of all points at the end of each {FFOPT} group |
| savepath | "points" | string | path name for saved points |
| optprogress | off | logical | show geometry optimization progress at each FF optimization step |
| comb_rules | off | logical | apply vdw combining rules at each FF optimization step |
[set]
| Key | Default value | Type | Description |
| name | string | name of the set. The name is mandatory for reference sets otherwise it is optional. | |
| Topology and FF parameters | |||
| topology* | string | input topology in the STOP format | |
| final_topology | string | optimized FF parameters will be saved as topology in the STOP format | |
| Probe mode | |||
| probesize | 0 | integer | number of atoms in a vdW probe. The probe must be at the end of the structure. |
| unique_probe_types | off | logical | |
| Reference setup | |||
| isreference | off | logical | set the set as a reference. In the reference mode, the set can contain only one point. This option is mutually exclusive with references and shift2zero. |
| references | list | names of sets, which are references for this set. This option is mutually exclusive with isreference and shift2zero. | |
| shift2zero | off | logical | make TRG energies relative to the global minima. This option is mutually exclusive with isreference and reference. |
| Points | |||
| optgeo | off | logical | optimize geometry at each optimization step |
| keepoptgeo | off | logical | keep optimized geometries for the next optimization step |
| savegeo | off | logical | save geometries of all points at the end of each {FFOPT} group |
| nofreqs | off | logical | do not calculate TRG vibrational frequencies when a point contains TRG Hessian |
| wmode | "auto" | string | weight mode. Supported modes: auto and ire2 |
| point | string | file name of point optionally followed by its weight. Multiple number of point specifications can be provided. | |
| points | string | file name of stream with points optionally followed by its weight. Multiple number of points specifications can be provided. | |